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Z. Kabir, Ph.D.
Soil Health Specialist for CA, NV & PIA
USDA-NRCS, Davis, CA
Arbuscular Mycorrhizal Fungi (AMF)
in Soil Health Paradigm
Outline
• AMF and soil health functions
• Impact of tillage practices on AMF
• Effects of land fallow on AMF
• Alternative to no-till practices on AMF
• Combined effects of tillage & fallow on AMF
• Cover crops in relation to AMF
• Conclusions
Plant and Mycorrhizal Symbiotic
Relationship
Carbohydrate
P & other nutrients
AMF
P Transport by AM Hyphae
Root Soil
PO4P depletion zone
2 mm 1 mm
Stele
AM hyphae
P uptake by AMF (adapted from Hayman, 1982)
Arbuscule
& vesicle
100 mm
T-DNA Carrot Root and AMF
Photo:Kabir
Hypha
spore
Soil
Impact of AMF on Soil Stability
Kabir
Fall Tillage Spring Tillage
Tillage Practices
Seasonal Changes of AM Hyphae in Tillage Systems
Kabir et al.
Spring Disk Fall Plow
Apr Jun Aug Oct Apr
Seasonal and Vertical Distribution of AM
Hyphae in NT and CT
0
100
200
300
400
500
600
700
1
2
3
4
0
5
10
15
20
25
Hyphaldensity(cmcm-3)
Growing
period
Depth (cm)
NT
0
100
200
300
400
500
600
1
2
3
4
0
5
10
15
20
25
Hyphaldensity(cmcm-3)
Growing
period
Depth (cm)
CT
Kabir, 2005
Influence of Tillage on AM Species
Scutellospora spp.
Boddington and Dodd found disappearance
Kabir et al. observed disappearance
G. aggregatum Glomus spp.
Sieverding observed 75%
G. scintillans
in plowed soil while 5% in NT
in CT
Tillage and Soil Aggregate Stability
Treatments Soil depth
0-5 cm 5-10 cm
Grass 53.2a 42.2b
NT 3 yr 37.7c 24.4de
NT 2 yr 30.8cd 26.4de
NT 1 yr 25.0de 24.8de
CT 4yr 16.7f 20.8ef
Comparison of aggregate stability across treatments of no-till
(NT) and conventional tillage (CT) corn at two soil depths.
Wright et al.
Intact AMF in No-till System
Williams et al. 2016
Soil Functional Zone Management
Spatial Distribution of AM Hyphae
Mid-row
Quarter-row
Row
Sandyloam soil
Activehyphallength(cmcm-3)
50
100
150
200
250
300
Totalhyphallength(cmcm-3)
100
150
200
250
300
350
400
CT
RT
NT
Clay soil
Row Quarter-row Mid-row Quarter-rowRow Mid-row
1992 1993
Row Quarter-row Mid-row
1992
Spatial Distribution of AM Hyphae in two Soils
Kabir et. al.
Ag.Ecosys. & Environment
Fallow Soil Erosion
Land Fallowing
Harinikumar and Bagyaraj
40% reduction after one season of fallow
13% reduction when a non-AMF plant in rotation
In Australia, Thompson showed that mycorrhizal colonization, P, Zn uptake, yields of various crops are
inversely related to the duration of the fallow. He called it a long-fallow disorder if fallow period is one year
Effect of Crop Rotation and Fallow on AMF
0 30 60 90
Fallow Period (day)
Combined Effects of Tillage and Fallow
Kabir et al.
Soil Biol. Biochem.
Cover Crops
AM fungi bridges Cover Crops to the
Subsequent Crops
Cover crops die
AM hyphae
Cover crop plot
Fallow plot
ShootPuptake(mg)
0
1
2
3
4
5
6
20
40
60
80
100
Fallow
Oats
Rye
Rye & oats
Days after planting
Shootdryweight(g)
0.0
0.3
0.6
0.9
1.2
5.0
10.0
15.0
20.0
25.0
c
b
b
a
c
b
a a
c
b
ab
a
c
b
a a
27 42
P uptake and dry weight in Cover Crops and
Fallow Fields
Mycorrhizal and Non-mycorrhizal
Cover Crops
BuckwheatOats Winter wheat
AM Fungi
Non-AM Fungi
Sweet Corn Root Colonized by Mycorrhizal Fungi
Days after planting
10 20 30 40 50 60 70
Mycorrhizalcolonization(%)
0
20
40
60
80
100
Fallow
Buckwheat
Oats
Winter wheat
*
*
*
*
*
*
ShootPuptake(mg)
0
5
10
15
20
25
Fallow
Buckwheat
Oats
Winter wheat
c c
b
a
c
c
b
a
Days after planting
14 31
Cornshootdryweight(g)
0
1
2
3
4
c c b
a
c
c
b
a
Corn P uptake and Shoot Dry Weight
Suitable Crop Rotation
Corn following Soybean
(Mycotrophic)
Corn following Canola
(Non-mycotrophic)
Koide, BYU
Hyphal Length and Soil Aggregates in Cover Crops and
Fallow Field
AM hyphal length (m g-1)
0 10 20 30 40 50 60
Waterstablesoilaggregates(%)
10
20
30
40
50
60
Fallow
Rye
Oats
Rye + Oats
R2
= 0.39
Hyphal length = 19.06 + 0.74 (%WSA)
P < 0.05
Kabir and Koide
Plant and Soil
• Judicial manipulation of agronomic
practices would benefit AMF survival and its
benefits
• Minimal or no disturbance of soil improve
AM fungal propagules and its diversity
• Mycotrophic plant in cropping systems
throughout year would improve AM fungal
survival and benefit to the soil and crops
Conclusions
Thank You
Ear Production of Corn in Different Cover Crops
Treatments
Annual Plants P uptake
Plants take up-10-20 % applied P
AM fungi
AM Hyphae Produced Phosphatase
Koide & Kabir
Seasonal and vertical distribution of Spore in NT and CT
0
10
20
30
40
50
0
1
2
3
4
5
0
5
10
15
20
25
Sporedensity(no.cm-3)
GrowingperiodinNT
Depth(cm)
Sporedensity(no.cm-3)
0
10
20
30
40
50
0
1
2
3
4
5
0
5
10
15
20
25
G
row
ing
period
in
CT
Depth (cm)

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Arbuscular mycorrhizal fungi kabir

  • 1. Z. Kabir, Ph.D. Soil Health Specialist for CA, NV & PIA USDA-NRCS, Davis, CA Arbuscular Mycorrhizal Fungi (AMF) in Soil Health Paradigm
  • 2. Outline • AMF and soil health functions • Impact of tillage practices on AMF • Effects of land fallow on AMF • Alternative to no-till practices on AMF • Combined effects of tillage & fallow on AMF • Cover crops in relation to AMF • Conclusions
  • 3. Plant and Mycorrhizal Symbiotic Relationship Carbohydrate P & other nutrients AMF
  • 4. P Transport by AM Hyphae Root Soil PO4P depletion zone 2 mm 1 mm Stele AM hyphae P uptake by AMF (adapted from Hayman, 1982) Arbuscule & vesicle 100 mm
  • 5. T-DNA Carrot Root and AMF Photo:Kabir
  • 6. Hypha spore Soil Impact of AMF on Soil Stability Kabir
  • 7. Fall Tillage Spring Tillage Tillage Practices
  • 8. Seasonal Changes of AM Hyphae in Tillage Systems Kabir et al. Spring Disk Fall Plow Apr Jun Aug Oct Apr
  • 9. Seasonal and Vertical Distribution of AM Hyphae in NT and CT 0 100 200 300 400 500 600 700 1 2 3 4 0 5 10 15 20 25 Hyphaldensity(cmcm-3) Growing period Depth (cm) NT 0 100 200 300 400 500 600 1 2 3 4 0 5 10 15 20 25 Hyphaldensity(cmcm-3) Growing period Depth (cm) CT Kabir, 2005
  • 10. Influence of Tillage on AM Species Scutellospora spp. Boddington and Dodd found disappearance Kabir et al. observed disappearance G. aggregatum Glomus spp. Sieverding observed 75% G. scintillans in plowed soil while 5% in NT in CT
  • 11. Tillage and Soil Aggregate Stability Treatments Soil depth 0-5 cm 5-10 cm Grass 53.2a 42.2b NT 3 yr 37.7c 24.4de NT 2 yr 30.8cd 26.4de NT 1 yr 25.0de 24.8de CT 4yr 16.7f 20.8ef Comparison of aggregate stability across treatments of no-till (NT) and conventional tillage (CT) corn at two soil depths. Wright et al.
  • 12. Intact AMF in No-till System
  • 13. Williams et al. 2016 Soil Functional Zone Management
  • 14. Spatial Distribution of AM Hyphae Mid-row Quarter-row Row
  • 15. Sandyloam soil Activehyphallength(cmcm-3) 50 100 150 200 250 300 Totalhyphallength(cmcm-3) 100 150 200 250 300 350 400 CT RT NT Clay soil Row Quarter-row Mid-row Quarter-rowRow Mid-row 1992 1993 Row Quarter-row Mid-row 1992 Spatial Distribution of AM Hyphae in two Soils Kabir et. al. Ag.Ecosys. & Environment
  • 17. Harinikumar and Bagyaraj 40% reduction after one season of fallow 13% reduction when a non-AMF plant in rotation In Australia, Thompson showed that mycorrhizal colonization, P, Zn uptake, yields of various crops are inversely related to the duration of the fallow. He called it a long-fallow disorder if fallow period is one year Effect of Crop Rotation and Fallow on AMF
  • 18. 0 30 60 90 Fallow Period (day) Combined Effects of Tillage and Fallow Kabir et al. Soil Biol. Biochem.
  • 20. AM fungi bridges Cover Crops to the Subsequent Crops Cover crops die AM hyphae
  • 22. ShootPuptake(mg) 0 1 2 3 4 5 6 20 40 60 80 100 Fallow Oats Rye Rye & oats Days after planting Shootdryweight(g) 0.0 0.3 0.6 0.9 1.2 5.0 10.0 15.0 20.0 25.0 c b b a c b a a c b ab a c b a a 27 42 P uptake and dry weight in Cover Crops and Fallow Fields
  • 23. Mycorrhizal and Non-mycorrhizal Cover Crops BuckwheatOats Winter wheat AM Fungi Non-AM Fungi
  • 24. Sweet Corn Root Colonized by Mycorrhizal Fungi Days after planting 10 20 30 40 50 60 70 Mycorrhizalcolonization(%) 0 20 40 60 80 100 Fallow Buckwheat Oats Winter wheat * * * * * *
  • 25. ShootPuptake(mg) 0 5 10 15 20 25 Fallow Buckwheat Oats Winter wheat c c b a c c b a Days after planting 14 31 Cornshootdryweight(g) 0 1 2 3 4 c c b a c c b a Corn P uptake and Shoot Dry Weight
  • 26. Suitable Crop Rotation Corn following Soybean (Mycotrophic) Corn following Canola (Non-mycotrophic) Koide, BYU
  • 27. Hyphal Length and Soil Aggregates in Cover Crops and Fallow Field AM hyphal length (m g-1) 0 10 20 30 40 50 60 Waterstablesoilaggregates(%) 10 20 30 40 50 60 Fallow Rye Oats Rye + Oats R2 = 0.39 Hyphal length = 19.06 + 0.74 (%WSA) P < 0.05 Kabir and Koide Plant and Soil
  • 28. • Judicial manipulation of agronomic practices would benefit AMF survival and its benefits • Minimal or no disturbance of soil improve AM fungal propagules and its diversity • Mycotrophic plant in cropping systems throughout year would improve AM fungal survival and benefit to the soil and crops Conclusions
  • 30. Ear Production of Corn in Different Cover Crops Treatments
  • 31. Annual Plants P uptake Plants take up-10-20 % applied P AM fungi
  • 32. AM Hyphae Produced Phosphatase Koide & Kabir
  • 33. Seasonal and vertical distribution of Spore in NT and CT 0 10 20 30 40 50 0 1 2 3 4 5 0 5 10 15 20 25 Sporedensity(no.cm-3) GrowingperiodinNT Depth(cm) Sporedensity(no.cm-3) 0 10 20 30 40 50 0 1 2 3 4 5 0 5 10 15 20 25 G row ing period in CT Depth (cm)